Comp. Neuro

Summary

Presentation I gave in 9.29, the computational neuroscience class at MIT. They attempted to build a model that could use the information obtained from recordings in the prefrontal cortex and other areas of a monkey brain to predict their behavior based on the 'state' their neuron groups were in.

For my computational neuroscience class, we had to present a paper and explain its methods and findings (along with possible applications) to the class. Below is my presentation.

-biafra
bahanonu [at] alum.mit.edu

additional articles to journey through:

janelia journal club #2
06 july 2011 | science

The second presentation that Alyson and I gave during the Janelia Undergrad program, it was a brilliant paper that used Hidden Markov model[...]s to build a predictive algorithm that could tell you what chromatin states you were in.

comment system!
05 august 2012 | website

Wanted to add the ability for people to comment on this website, but delayed adding the feature until I could write the code myself. There [...]are many pre-built PHP solutions on the market (like commentator), but the original purpose of this site was to allow me to learn how to build a website from scratch. So I've implemented the comment system using about a hundred lines of code to access the MySQL database, verify inputs and display all the comments for a particular article.

bash scripting: youtube downloading macro
17 may 2013 | programming

<p> Once again, the command line is the root of all that is good in the world. This time, it has helped improve on a long[...]-standing issue for me: what is the easiest way to get a copy of all the <a href='http://www.youtube.com/playlist?list=PLmku2swCXQpqWAZSscjV4h9bcLennVcif' target='_blank'>luscious melodies</a> i hear on youtube? Courtesy of <a href='http://rg3.github.io/youtube-dl/' target='_blank'>youtube-dl</a>, a nifty little command line utility, this problem has been solved. However, every once in awhile it throws errors and i wanted a wrapper bash script to take care of this and some other processing. I'll briefly go over the code. </p>

bio42: diagrams, part 1
25 january 2013 | teaching

Had a couple minutes to spare before leaving lab, so decided to throw together some diagrams to help explain a couple biological pathways s[...]tudents of bio42, a bio class at Stanford I'm TAing. Hoping to make a set for each system we study. Started with vesicle budding and fusion along with muscle contraction in smooth and skeletal muscles.

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